PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2983s0191.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 406aa    MW: 44876.5 Da    PI: 8.8956
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2983s0191.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0583105123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Bostr.2983s0191.1.p  83 FVCEICNKGFQRDQNLQLHRRGH 105
                          89*******************88 PP

2zf-C2H212.80.00035160182123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H + +
  Bostr.2983s0191.1.p 160 WKCEKCSKFYAVQSDWKAHTKIC 182
                          58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-682105No hitNo description
Gene3DG3DSA:3.30.160.601.3E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01783105IPR015880Zinc finger, C2H2-like
PfamPF121716.2E-583105IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94983105IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355310125155IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.82E-6155180No hitNo description
SMARTSM00355180160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDMFSSHSLS YKLSSLSTEA SASSGNTLST IQDFSGFNNV ISSLCTHTET HKTKKRRGLP  60
GNPDPNAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQKNSKEQQ  120
RKKVYVCPEI NCVHHHPSRA LGDLTGIKKH FCRKHGEKKW KCEKCSKFYA VQSDWKAHTK  180
ICGTREYRCD CGTLFSRKDS FITHRAFCDA LAEESARMLS TSSSNLTNPN PNFQDHHFMV  240
DKSSPLIFTS PLYVEPSSHS TAALSTSSMA ALSATALLQK ATALSSSAFG GGGQTRSIGH  300
HRNLTNVNEL LGVDRVMMTS SSSSEYDQLV VDGFTSTWQK ADRLTRDFLG LTGHGVHVSV  360
RPGDMLEYAG GVAFPMSAYD TETHDHELSS FQKAYDLGFS GPHTM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109122KLKQKNSKEQQRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936720.0AB493672.1 Arabidopsis thaliana At4g02670 mRNA for hypothetical protein, partial cds, clone: RAAt4g02670.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872826.10.0atidd12-domain 12
SwissprotO227590.0IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLD7M3F30.0D7M3F3_ARALL; Atidd12-domain 12
STRINGfgenesh1_pg.C_scaffold_60031590.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.10.0indeterminate(ID)-domain 12